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Application of Stacked Autoencoders to P300 Experimental Data

VAŘEKA, L., PROKOP, T., MOUČEK, R., MAUTNER, P., ŠTĚBETÁK, J. Application of Stacked Autoencoders to P300 Experimental Data. In Artificial Intelligence and Soft Computing. Cham: Springer, 2017. s. 187-198. ISBN: 978-3-319-59062-2 , ISSN: 0302-9743
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Deep learning has emerged as a new branch of machine learning in recent years. Some of the related algorithms have been reported to beat state-of-the-art approaches in many applications. The main aim of this paper is to verify one of the deep learning algorithms, specifically a stacked autoencoder, to detect the P300 component. This component, as a specific brain response, is widely used in the systems based on brain-computer interface. A simple brain-computer interface experiment more than 200 school-age participants was performed to obtain large datasets containing the P300 component. After feature extraction the collected data were split into the training and testing sets. State-of-the art BCI classifiers (such as LDA, SVM, or Bayesian LDA) were applied to the data and then compared with the results of stacked autoencoders.

Applying an Archetype-Based Approach to Electroencephalography/Event-Related Potential Experiments in the EEGBase Resource

PAPEŽ, V., MOUČEK, R. Applying an Archetype-Based Approach to Electroencephalography/Event-Related Potential Experiments in the EEGBase Resource. Frontiers in Neuroinformatics, 2017, roč. 11, č. 24, s. 1-13. ISSN: 1662-5196
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The purpose of this study is to investigate the feasibility of applying openEHR (an archetype-based approach for electronic health records representation) to modeling data stored in EEGBase, a portal for experimental electroencephalography/eventrelated potential (EEG/ERP) data management. The study evaluates re-usage of existing openEHR archetypes and proposes a set of new archetypes together with the openEHR templates covering the domain. The main goals of the study are to (i) link existing EEGBase data/metadata and openEHR archetype structures and (ii) propose a new openEHR archetype set describing the EEG/ERP domain since this set of archetypes currently does not exist in public repositories

Event-related potential data from a guess the number brain-computer interface experiment on school children

MOUČEK, R., VAŘEKA, L., PROKOP, T., ŠTĚBETÁK, J., BRŮHA, P. Event-related potential data from a guess the number brain-computer interface experiment on school children. Scientific Data, 2017, roč. 4, č. March 2017, s. 1-11. ISSN: 2052-4463
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Guess the number is a simple P300-based brain-computer interface experiment. Its aim is to ask the measured participant to pick a number between 1 and 9. Then, he or she is exposed to corresponding visual stimuli and experimenters try to guess the number thought while they are observing event-related potential waveforms on-line. 250 school-age children participated in the experiments that were carried out in elementary and secondary schools in the Czech Republic. Electroencephalographic data from three EEG channels (Fz, Cz, Pz) and stimuli markers were stored. Additional metadata about the participants were collected (gender, age, laterality, the number thought by the participant, the guess of the experimenters, and various interesting additional information). Consequently, we offer the largest publicly available odd-ball paradigm collection of datasets to neuroscientific and brain-computer interface community.

Development coordination disorder in children ? experimental work and data annotation

VAŘEKA, L., BRŮHA, P., MOUČEK, R., MAUTNER, P., ČEPIČKA, L., HOLEČKOVÁ, I. Development coordination disorder in children ? experimental work and data annotation. GigaScience, 2017, roč. 6, č. 4, s. 1-6. ISSN: 2047-217X
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Developmental coordination disorder (DCD) is described as a motor skill disorder characterized by a marked impairment in the development of motor coordination abilities that significantly interferes with performance of daily activities and/or academic achievement. Since some electrophysiological studies suggest differences between children with/without motor development problems, we prepared an experimental protocol and performed electrophysiological experiments with the aim of making a step toward a possible diagnosis of this disorder using the event-related potentials (ERP) technique. The second aim is to properly annotate the obtained raw data with relevant metadata and promote their long-term sustainability. Results: The data from 32 school children (16 with possible DCD and 16 in the control group) were collected. Each dataset contains raw electroencephalography (EEG) data in the BrainVision format and provides sufficient metadata (such as age, gender, results of the motor test, and hearing thresholds) to allow other researchers to perform analysis. For each experiment, the percentage of ERP trials damaged by blinking artifacts was estimated. Furthermore, ERP trials were averaged across different participants and conditions, and the resulting plots are included in the manuscript. This should help researchers to estimate the usability of individual datasets for analysis. Conclusions: The aim of the whole project is to find out if it is possible to make any conclusions about DCD from EEG data obtained. For the purpose of further analysis, the data were collected and annotated respecting the current outcomes of the International Neuroinformatics Coordinating Facility Program on Standards for Data Sharing, the Task Force on Electrophysiology, and the group developing the Ontology for Experimental Neurophysiology. The data with metadata are stored in the EEG/ERP Portal.

Data Format for Storing ANT Sensors Data

JEŽEK, P., MOUČEK, R. Data Format for Storing ANT Sensors Data. In Proceedings of the 10th International Joint Conference on Biomedical Engineering Systems and Technologies. Setúbal: ScitePress, 2017. s. 396-400. ISBN: 978-989-758-213-4
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Medical treatment of sudden and especially chronic diseases has become more expensive. People suffering from a variety of diseases had been traditionally treated in hospitals for a long time. Fortunately, the current situation has been changing also thanks to relatively cheap body sensors and development of systems for home treatment. It brings inconsiderable cost savings and improves patients? comfort. On the other hand, it puts demands on the used technical infrastructure and home treatment system developers who must solve integration of different systems. A crucial point is a definition of unified data formats facilitating transfer and storage of data to/in remote databases. There are standards and APIs such as Zigbee, Bluetooth low energy or ANT+ that define a protocol for data transfer. However, they do not define a suitable format for long term data storing. In this paper, data coming from ANT+ sensors have been studied and metadata related to all kinds of body sensors and raw data and metadata specific to individual sensors have been defined. Then a framework organizing data and metadata obtained from ANT+ sensors into an open and general data format suitable for long term storage of sensor data is introduced. Finally, a sample use-case showing the transfer of data from a sensor into a data storage is presented.

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